poreana.utils

Here popular basic methods are noted.

Functions

column(data)	Convert given row list matrix into column list matrix
file_to_text(link, link_output[, link_dens])	This function converts an output directory in txt file.
load(link[, file_type])	Load pickled object files, yaml files, and hd5 files.
mkdirp(directory)	Create directory if it does not exist.
mmol_g_to_mumol_m2(c, SBET)	Convert the concentration \(\frac{\text{mmol}}{\text{g}}\) to \(\frac{\mu\text{mol}}{\text{m}^2}\).
mmol_l_to_mols(c, V)	Convert the concentration in \(\frac{\text{mmol}}{\text{l}}\) to number of molecules.
mols_to_mmol_l(N, V)	Convert the number of molecules to concentration in \(\frac{\text{mmol}}{\text{l}}\).
mols_to_mumol_m2(N, A)	Convert the number of molecules to concentration in \(\frac{\mu\text{mol}}{\text{m}^2}\).
mumol_m2_to_mols(c, A)	Convert the concentration in \(\frac{\mu\text{mol}}{\text{m}^2}\) to number of molecules.
num_dens_to_mass_dens(dens)	Convert number density \(\rho \left(\frac{\text{#}}{\text{nm}^3}\right)\) into mass density \(\rho_{\text{m}} \left(\frac{\text{kg}}{\text{m}^3}\right)\) from the dictonary from function pa.density.bins() with
save(obj, link)	Save an object files, yaml files, and hd5 files using pickle in the specified link.
tic()	MATLAB tic replica - return current time.
toc(t[, message, is_print])	MATLAB toc replica - return time difference to tic and alternatively print a message.