Sample.init_diffusion_bin¶

Sample.init_diffusion_bin(link_out, bin_num=50, len_obs=1.6e-11, len_frame=2e-12, len_step=2, bin_step_size=1)¶

Enable diffusion sampling routine.

Parameters:

link_outstring: Link to hdf5, obj or yml data file
bin_numinteger, optional: Number of bins to be used
len_obsfloat, optional: Observation length of a window in seconds
len_framefloat, optional: Length of a frame in seconds
len_stepinteger, optional: Length of the step size between frames
bin_step_sizeinteger, optional: Number of allowed bins for the molecule to leave