mc_profile¶

poreana.diffusion.mc_profile(link, len_step=[], section=[], infty_profile=True, is_plot=True, is_error=True, kwargs={})¶

This function plots the diffusion profile for an infinity lag time (\(\Delta t_{\alpha} \rightarrow \infty\)) over the box fitted with the specified \(\mathrm{len}\_\mathrm{step}\) list. Additionally, it is possible to display the diffusion profiles for the calculated lag times. Therefore, the \(\mathrm{infty}\_\mathrm{profile}\) has to be false. The list \(\mathrm{len}\_\mathrm{step}\) contains the calculated step length which should be displayed.

Parameters:

linkstring: Link to the diffusion hdf5 data file generated by the MC Algorithm poreana.mc.MC.run()
len_stepinteger list, optional: List of the different step length, if it is [] all diffusion profiles depending on the lag time are used to calculate the diffusion profile for an infinite lag time or the individual diffusion profiles for these lag times are shown
sectionlist, string, optional: If \(\mathrm{section} = \mathrm{"pore"}\) the pore section is fitted. If \(\mathrm{section} = \mathrm{"reservoir"}\) the left reservoir area is fitted. If \(\mathrm{section} = \mathrm{[a,b]}\) the box area between a and b is fitted.
infty_profilebool, optional: Set to false to display all individual diffusion profiles for the selected lag times
is_plotbool, optional: Show diffusion profile
is_errorbool, optional: Show error area
kwargs: dict, optional: Dictionary with plotting parameters

Returns:

diff_profile_fitlist: Diffusion profile \(\left(10^{-9} \frac{m^2}{s}\right)\) for an infinite lag time
diff_profilesdict: Diffusion profiles \(\left(10^{-9} \frac{m^2}{s}\right)\) for every calculated lag time
binslist: bins over the box length