PoreAmorphCylinder.attach_special¶

PoreAmorphCylinder.attach_special(mol, mount, axis, amount, scale=1, symmetry='point', is_proxi=True, is_rotate=False)¶

Special attachment of molecules on the surface.

Parameters:

molMolecule: Molecule object to attach
mountinteger: Atom id of the molecule that is placed on the surface silicon atom
axislist: List of two atom ids of the molecule that define the molecule axis
amountint: Number of molecules to attach
scalefloat, optional: Circumference scaling around the molecule position
symmetrystring, optional: Symmetry option - point, mirror
is_proxibool, optional: True to fill binding sites in proximity of filled binding site
is_rotatebool, optional: True to randomly rotate molecule around own axis