Atom¶

class porems.atom.Atom(pos, atom_type, name='', residue=0)¶

This class defines an atom object containing the position, the atom type and optionally a specific name.

Parameters:

poslist: Atom position
atom_typestring: Atom type as in the periodic table of elements
namestring, optional: Atom name
residueinteger, optional: Residue number

Methods

`get_atom_type`()	Return the atom type.
`get_name`()	Return the atom name.
`get_pos`()	Return the atom position.
`get_residue`()	Return the residue index.
`set_atom_type`(atom_type)	Set the atom type.
`set_name`(name)	Set the atom name.
`set_pos`(pos)	Set the atom position.
`set_residue`(residue)	Set the residue index.